Compare the lola motif distribution among promoter of all genes to the that of the opening set genes and lola bound genes
Project:
Author: Vivek
Generated: Fri Mar 04 2022, 07:01 AM
## Warning in .Seqinfo.mergexy(x, y): Each of the 2 combined objects has sequence levels not in the other:
## - in 'x': chrM, chrX_DS484099v1_random, chrX_DS484216v1_random, chrY_DS485329v1_random
## - in 'y': chrUn_DS483562v1, chrUn_DS484160v1, chrUn_DS484280v1, chrX_DS484953v1_random
## Make sure to always combine/compare objects based on the same reference
## genome (use suppressWarnings() to suppress this warning).
Look at the MNase profile at Lola target genes
Project: Promoter Opening
Author: Vivek
Generated: Fri Mar 04 2022, 07:02 AM
## There are 691 positive granges and 729 negative granges
## There are 691 positive granges and 729 negative granges
## There are 691 positive granges and 729 negative granges
## There are 691 positive granges and 729 negative granges
## There are 691 positive granges and 729 negative granges
## There are 691 positive granges and 729 negative granges